docs(v5): fix neurotransmitter dedup + regenerate all CSV with corrected data

Fixes: deduplicate barrier/scfa/neurotransmitter entries in triplet format (19->11 items per person). Regenerated CSV: antibiotic risk 9 items (was 256), disease risk 15 items, neurotransmitter 49 items (was 79).

docs/参考资料/CSV/主要消化道致病菌.csv

@@ -1,9 +1,9 @@
 致病菌,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
 幽⻔螺杆菌,0%,,0%,,
-幽门螺杆菌,,0%,,,
-弯曲杆菌,0%,0%,0%,,
+幽门螺杆菌,,0%,,,0%
+弯曲杆菌,0%,0%,0%,,0%
 志贺⽒菌,0%,,0%,,
-志贺氏菌,,0%,,,
+志贺氏菌,,0%,,,0%
 沙⻔⽒菌,0%,,0%,,
-沙门氏菌,,0%,,,
-艰难梭菌,0%,0%,0%,,
+沙门氏菌,,0%,,,0%
+艰难梭菌,0%,0%,0%,,0%

docs/参考资料/CSV/主要营养评估.csv

@@ -1,10 +1,6 @@
 指标,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
-乳制品,36,66,36,28,
-偏低赖氨酸,,,,,90
-正常乳制品,,,,,42
-正常异亮氨酸,,,,,66
-正常脂肪,,,,,59
+乳制品,36,66,36,28,42
 碳水化合物,96,44,67,85,76
-纤维素,96,58,75,60,
-脂肪,71,59,89,62,
-蛋白质,44,93,83,52,
+纤维素,96,58,75,60,81
+脂肪,71,59,89,62,59
+蛋白质,44,93,83,52,65

docs/参考资料/CSV/微量元素评估.csv

@@ -1,3 +1,3 @@
 微量元素,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
-铁,2,81,66,3,
-锌,52,73,36,9,
+铁,2,81,66,3,4
+锌,52,73,36,9,33

docs/参考资料/CSV/抗生素风险评估.csv

@@ -1,256 +1,10 @@
 抗生素,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
-+,2,,2,2,
--,2,,2,2,
--内酰胺酶类,,,,,76
-Akkermansia,0.0135,,0.0101,0.0184,
-DOPAC,19,,58,82,
-Dorea菌属 Dorea,0.0501,,0.0804,0.0181,
-Erysipelatoclostridium,0.0574,,0.1186,0.0110,
-Flavonifractor,0.0033,,0.1186,0.2579,
-II型糖尿病,0.21,,0.18,,
-Lachnoclostridium,0.2093,,1.5483,1.5173,
-ND,0,,0,0,
-PeppelenboschNature Reviews Gastroenterology Hepatology 10.12 (2013): 741-,745.,,745.,,
-Streptococcus,0.0100,,0.0165,0.1322,
-"and estrogen metabolites: a cross-sectional study[J]. Journal of translational medicine, 2012, 10(1):",,,253.,,
-"colitogenicbacteria in inflammatory bowel disease. ""Cell 158.5(2014): 1000-",,,,1010,
-"colitogenicbacteria in inflammatory bowel disease. ""Cell 158.5(2014): 1000-",1010,,1010,,
-β-内酰胺酶类,20,67,70,81,
-γ-氨基丁酸（GABA）,8,,56,15,
-⻓双歧杆菌 Bifidobacterium longum,0.0270,,0.0033,,
-⻓链多尔⽒菌 Dorea longicatena,0.0268,,0.0133,,
-⻘春双歧杆菌 Bifidobacterium adolescentis,0.2093,,0.0948,,
-⻙荣菌属 Veillonella,,,0.0066,,
-⼀氧化氮,73,,86,,
-⼄酸盐,21,,38,,
-⼫胺,21,,11,,
-⽑螺旋菌科 Lachnospiraceae,4.0683,,13.2808,,
-⽑螺菌属 Lachnospira,0.1943,,2.3302,,
-⾃体免疫疾病,0.08,,0.12,,
-⾊氨酸（Tryptophan）,2,,49,,
-一氧化氮,,,,97,
-丁酸盐,14,,69,84,
-丁酸盐不足：与核心产丁酸有益菌缺乏直接相关，加重肠道炎症与代谢紊乱,2,,,,
-三项分值的标准为,85,,85,85,
-下水道菌属 Cloacibacillus,0.0033,,,,
-丙氨酸,1,,19,73,
-丙酸杆菌属 Propionibacterium,,,,0.0036,
-丙酸盐,71,,70,33,
-丝氨酸,9,,20,99,
-丹毒丝菌科 Erysipelotrichaceae,0.1778,,1.4861,0.4954,
-乙酸盐,,,,41,
-乳制品,36,,36,28,
-乳杆菌属 Lactobacillus,0.7434,,1.2616,0.1360,
-五、营养状况分析,,,1,,
-产碱菌科 Alcaligenaceae,,,0.0880,,
-亨盖特⽒菌属 Hungatella,0.1249,,0.0166,,
-亨盖特氏菌属 Hungatella,,,,0.5818,
-亮氨酸,1,,13,68,
-优杆菌属 Eubacterium,0.1712,,1.4728,0.4918,
-健康总分,57,,78,70,
-克雷伯⽒菌属 Klebsiella,0.0132,,0.0333,,
-克雷伯氏菌属 Klebsiella,,,,0.0510,
-共检测到：,1470,,1906,919,
-副拟杆菌属 Parabacteroides,0.7216,,2.4839,0.6039,
-副普雷沃⽒菌属 Paraprevotella,0.1857,,4.2255,,
-副萨特⽒菌属 Parasutterella,0.2165,,1.8566,,
-副萨特氏菌属 Parasutterella,,,,0.4495,
-单形拟杆菌 Bacteroides uniformis,0.0402,,3.0506,1.9690,
-卵形拟杆菌 Bacteroides ovatus,0.0200,,1.7467,1.2341,
-厌氧棍状菌属 Anaerotruncus,0.0100,,,0.0110,
-厌氧棒状菌属 Anaerostipes,0.0202,,0.0067,0.7179,
-厚壁菌⻔ Firmicutes,21.1676,,36.4229,,
-厚壁菌门 Firmicutes,,,,75.6217,
-双歧杆菌属 Bifidobacterium,0.2396,,0.1114,0.1141,
-变形菌⻔ Proteobacteria,1.1285,,2.8750,,
-变形菌门 Proteobacteria,,,,2.4261,
-另枝菌属 Alistipes,1.0104,,1.3787,0.7512,
-可提升色氨酸利用率,4,,,,
-叶酸,35,,62,13,
-合成，与抑郁、失眠相关。,3,,,,
-吉米菌属 Gemmiger,0.1955,,0.1892,1.3076,
-吲哚,9,,46,49,
-呋喃类,82,82,82,86,
-喹啉（Quinolinic）,5,,27,71,
-喹诺酮类,30,51,64,61,
-嗜胆菌属 Bilophila,0.1352,,0.2477,,
-嗜血杆菌属 Haemophilus,,,,0.0441,
-四环素类,48,58,69,96,
-埃希⽒菌属 Escherichia,0.0202,,0.1625,,
-埃希氏菌属 Escherichia,,,,0.0181,
-多巴胺,94,,85,72,
-多样性：中等多样,3,,,,
-大环内酯类,39,62,65,97,
-宏量营养素（蛋白质、碳水化合物、脂肪）摄入水平均处于正常范围,2,,,,
-宏量营养素：蛋白质、碳水化合物、脂肪摄入水平均处于正常区间，无需特殊调整。,,,2,,
-对甲酚（p-Cresol）,54,,63,98,
-尸胺,,,,43,
-巨单胞菌属 Megamonas,,,0.0169,,
-巨球形菌属 Megasphaera,0.0101,,0.0337,0.0294,
-异亮氨酸,3,,11,81,
-异常波动等不适。,2,,,,
-异常菌群及对应问题,1,,1,,
-异戊酸盐（Isovaleric）,6,,75,,
-弯曲杆菌属 Campylobacter,,,0.0033,,
-心脑⾎管疾病,0.37,,0.25,,
-心脑血管疾病风险,0.37,,,,
-志贺氏菌属 Shigella,,,,0.0072,
-您的厚壁菌比拟杆菌比值为：,0.28,,0.61,3.63,
-感染性腹泻,0.16,,0.23,0.41,
-戴阿利斯特杆菌属 Dialister,0.0769,,0.0977,0.1104,
-扭链瘤胃球菌 Ruminococcus torques,,,0.0033,0.7842,
-抑郁症,0.27,,0.23,0.22,
-拟杆菌⻔ Bacteroidetes,76.7210,,59.4042,,
-拟杆菌属 Bacteroides,13.2781,,45.0500,18.4336,
-拟杆菌门 Bacteroidetes,,,,20.8184,
-放线菌属 Actinomyces,0.0033,,0.0100,0.0257,
-普⽒栖粪杆菌 Faecalibacterium prausnitzii,3.0465,,6.5485,,
-普氏栖粪杆菌 Faecalibacterium prausnitzii,,,,13.9120,
-普通拟杆菌 Bacteroides vulgatus,1.5453,,19.1607,0.0255,
-普雷沃⽒菌属 Prevotella,60.0857,,4.2684,,
-普雷沃⽒菌科 Prevotellaceae,60.1093,,4.2684,,
-普雷沃氏菌属 Prevotella,,,,0.6430,
-普雷沃氏菌科 Prevotellaceae,,,,0.6430,
-有害菌,26,,41,37,
-有害菌水平：,26,,,,
-有害菌：,,,41,,
-有益菌,22,,25,23,
-有益菌水平：,22,,,,
-有益菌：,,,25,,
-本次检测多项神经递质与代谢物不足，均与肠道菌群紊乱直接相关，同时加重肥胖及情绪睡眠问题：,1,,,,
-本次检测显示多项营养摄入或代谢异常：,1,,,,
-本次菌群疾病风险模型未提示风险超过,,,0.3,,
-本次送检者为,53,,,,
-枸橼酸杆菌属 Citrobacter,,,0.0168,0.0036,
-柯⽒杆菌 Collinsella aerofaciens,0.2466,,0.0169,,
-柯林斯⽒菌属 Collinsella,0.2801,,0.0169,,
-柯林斯氏菌属 Collinsella,,,,0.0552,
-核心菌属,85,,83,65,
-核心菌属总占比：,85,,83,,
-根据您的肠道菌群中肠易激综合征患者与健康⼈之间的差异菌群，分析了您的肠易激综合征⻛险，显⽰分值为,0.18,,0.17,,
-根据您的肠道菌群中肠易激综合征患者与健康人之间的差异菌群，分析了您的肠易激综合征风险，显示分值为,,,,0.17,
-梭杆菌属 Fusobacterium,,,0.0067,,
-梭菌属 Clostridium,0.2787,,1.1836,0.6731,
-梭菌目 Clostridiales,11.4727,,26.5652,51.4291,
-次级胆汁酸,9,,94,83,
-次级胆汁酸不足：影响脂肪代谢，加重肥胖,5,,,,
-正常喹诺酮类,,,,,11
-正常四环素类,,,,,96
-正常甲氧苄啶类,,,,,93
-毛螺旋菌科 Lachnospiraceae,,,,30.8155,
-毛螺菌属 Lachnospira,,,,2.6397,
-氨基糖苷类,5,68,71,94,
-氯霉素类,8,63,70,57,
-沙⻔⽒菌属 Salmonella,0.0236,,0.0270,,
-沙门氏菌属 Salmonella,,,,0.0109,
-泛菌属 Pantoea,0.0473,,0.3258,0.1326,
-注意大环内酯类,,,,,95
-活泼瘤胃球菌 Ruminococcus gnavus,0.0033,,0.0033,0.2246,
-炎症性肠炎,0.24,,0.27,0.37,
-爱格士氏菌属 Eggerthella,,,,0.0552,
-甘氨酸,5,,24,43,
-用户为,,,53,,
-甲氧苄啶类,55,48,55,95,
-甲状腺疾病,0.33,,0.13,0.39,
-甲状腺疾病风险,0.33,,,,
-瘤胃梭菌属 Ruminiclostridium,0.0066,,0.0574,0.0294,
-瘤胃球菌属 Ruminococcus,1.6504,,1.9927,2.1607,
-直肠真杆菌属 Agathobacter,0.1342,,7.3316,0.0365,
-硫化氢,8,,16,46,
-碳水化合物,96,,67,85,
-磺胺类,61,51,37,36,
-秘、腹胀、抑郁、过敏问题,,,3,,
-粪杆菌属 Faecalibacterium,3.2406,,7.1088,14.2451,
-粪球菌属 Coprococcus,1.8668,,0.2561,1.4292,
-红蝽菌科 Coriobacteriaceae,0.2801,,0.0169,0.0552,
-纤维素,96,,75,60,
-组氨酸,40,,58,73,
-组胺（Histamine）,67,,46,80,
-经⼥性）,,,53,,
-经黏液真杆菌属 Blautia,0.1206,,0.5625,3.1770,
-结直肠癌,0.26,,0.21,,
-维生素A,84,,81,26,
-维生素B1,2,,56,77,
-维生素B12,25,,31,77,
-维生素B2,77,,33,77,
-维生素B5,64,,48,78,
-维生素B6,38,,58,79,
-维生素C,31,,36,60,
-维生素D,93,,92,16,
-维生素K2,75,,49,13,
-缬氨酸,2,,9,91,
-罗⽒菌属 Roseburia,1.1301,,0.2392,,
-罗氏菌属 Roseburia,,,,15.3088,
-考拉杆菌属 Phascolarctobacterium,0.0101,,4.4324,1.4663,
-肌醇（Inositol）,31,,88,14,
-肝病,0.21,,0.12,,
-肠易激综合征,0.18,,0.17,0.17,
-肠杆菌属 Enterobacter,0.0067,,0.0168,,
-肠杆菌科 Enterobacteriaceae,0.0637,,0.2732,0.1053,
-肠球菌属 Enterococcus,,,0.0066,,
-肠道产⽓,8,,46,,
-肠道产气,,,,89,
-肠道屏障,65,,22,43,
-肠道炎症水平,16,,8,8,
-肠道菌群⾎清素合成能⼒,57,,41,,
-肠道菌群平衡,38,,39,38,
-肠道菌群血清素合成能力,,,,10,
-肺部疾病,0.12,,0.17,0.38,
-肾病,0.05,,0.05,,
-胃病,0.20,,0.21,,
-胆病,0.14,,0.15,,
-胱氨酸,86,,74,92,
-脂多糖LPS,58,,38,2,
-脂肪,71,,89,62,
-脆弱拟杆菌 Bacteroides fragilis,0.0202,,0.2303,2.2654,
-脯氨酸,1,,6,82,
-脱硫弧菌属 Desulfovibrio,0.4734,,,,
-腐胺,4,,49,64,
-自体免疫疾病,,,,0.29,
-自闭症,,,,0.45,
-臭⽓杆菌属 Odoribacter,0.1894,,0.2953,,
-臭气杆菌属 Odoribacter,,,,0.3169,
-艾克曼菌 Akkermansia muciniphila,0.0135,,0.0101,0.0184,
-芽孢杆菌属 Bacillus,0.0033,,,0.0109,
-苏氨酸,10,,12,92,
-苏黎世杆菌属 Turicibacter,0.0100,,,0.3242,
-苯丙氨酸,1,,14,87,
-苯酚,7,,12,44,
-菌群健康,76,,81,74,
-菌群多样性,50,,86,72,
-菌群平衡值：,38,,,,
-菌群平衡：,,,39,,
-菌群核心指标,1,,,,
-营养均衡,30,,74,83,
-萨特⽒菌属 Sutterella,,,0.0880,,
-葡萄球菌属 Staphylococcus,,,,0.0626,
-蛋氨酸,8,,10,95,
-蛋白质,44,,83,52,
-血链球菌 Streptococcus sanguinis,,,,0.0036,
-解黄酮菌属 Flavonifractor,0.0033,,0.1186,0.2579,
-谷氨酸,7,,69,94,
-谷氨酸（Glutamate）,7,,69,94,
-赖氨酸,7,,38,94,
-过敏风险升高,,,2,,
-酪氨酸,47,,46,60,
-酸的核心有益菌，缺乏会引发肠道屏障受损、炎症反应、代谢紊乱、便秘及免疫异常。,2,,,,
-铁,2,,66,3,
-锌,52,,36,9,
-长双歧杆菌 Bifidobacterium longum,,,,0.1141,
-阿克曼⽒菌属 Akkermansia,0.0135,,0.0101,,
-阿克曼氏菌属 Akkermansia,,,,0.0184,
-震颤杆菌属 Oscillibacter,0.0368,,0.0267,0.0183,
-霍尔德曼⽒菌属 Holdemania,0.0100,,0.0168,,
-霍尔德曼氏菌属 Holdemania,,,,0.0515,
-霍尔德曼穆尔菌属 Holdemanella,0.1318,,,,
-韦荣菌属 Veillonella,,,,0.2320,
-颤螺菌属 Oscillospira,0.2999,,0.2222,0.0108,
-食葡糖罗斯拜瑞⽒菌 Roseburia inulinivorans,0.6958,,0.1182,,
-食葡糖罗斯拜瑞氏菌 Roseburia inulinivorans,,,,0.8472,
-龙包茨⽒菌属 Romboutsia,0.0202,,,,
-（Isovaleric）,,,,42,
-（Tryptophan）,,,,87,
-）,5,,,,
-）不足：影响神经系统稳定，可能加重情绪不稳、睡眠质量差,3,,,,
-）：,1,,,,
-：未检出，可调节肠道能量代谢与免疫，缺乏可能影响体重管理与肠道稳态,,,4,,
+β-内酰胺酶类,20,67,70,81,76
+呋喃类,82,82,82,86,82
+喹诺酮类,30,51,64,61,11
+四环素类,48,58,69,96,96
+大环内酯类,39,62,65,97,95
+氨基糖苷类,5,68,71,94,97
+氯霉素类,8,63,70,57,86
+甲氧苄啶类,55,48,55,95,93
+磺胺类,61,51,37,36,73

docs/参考资料/CSV/氨基酸评估.csv

@@ -1,17 +1,16 @@
 氨基酸,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
-丙氨酸,1,9,19,73,
-丝氨酸,9,88,20,99,
-正常叶酸,,,,,47
-正常组氨酸,,,,,68
-正常脯氨酸,,,,,12
-正常谷氨酸,,,,,67
-正常酪氨酸,,,,,74
-正常铁,,,,,4
-甘氨酸,5,38,24,43,
-组氨酸,40,74,58,73,
-缬氨酸,2,75,9,91,
+丙氨酸,1,9,19,73,50
+丝氨酸,9,88,20,99,75
+亮氨酸,,,,,14
+异亮氨酸,,,,,66
+甘氨酸,5,38,24,43,33
+组氨酸,40,74,58,73,68
+缬氨酸,2,75,9,91,38
 胱氨酸,86,97,74,92,59
-脯氨酸,1,47,6,82,
-苯丙氨酸,1,38,14,87,
-谷氨酸,7,27,69,94,
-酪氨酸,47,83,46,60,
+脯氨酸,1,47,6,82,12
+苏氨酸,,,,,78
+苯丙氨酸,1,38,14,87,85
+蛋氨酸,,,,,56
+谷氨酸,7,27,69,94,67
+赖氨酸,,,,,90
+酪氨酸,47,83,46,60,74

docs/参考资料/CSV/疾病风险评估.csv

@@ -1,35 +1,16 @@
 疾病,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
 II型糖尿病,0.21,,0.18,,
-⾃体免疫病,0.08,,0.12,,
-乳制品,36,66,36,28,
-亮氨酸,1,52,13,68,
-低风险感染性腹泻,,,,,0.34
-低风险抑郁症,,,,,0.25
-低风险肺部感染或疾病,,,,,0.09
-偏低赖氨酸,,,,,90
-异亮氨酸,3,83,11,81,
-心脑⾎管疾病,0.37,,0.25,,
-感染性腹泻,0.16,0.41,0.23,0.41,
-抑郁症,0.27,0.36,0.23,0.22,
-正常乳制品,,,,,42
-正常异亮氨酸,,,,,66
-正常脂肪,,,,,59
+感染性腹泻,0.16,0.41,0.23,0.41,0.34
+抑郁症,0.27,0.36,0.23,0.22,0.25
 炎症性肠炎,0.24,0.28,0.27,0.37,0.26
-甲状腺疾病,0.33,0.12,0.13,0.39,
-碳水化合物,96,44,67,85,76
-纤维素,96,58,75,60,
+甲状腺疾病,0.33,0.12,0.13,0.39,0.06
 结直肠癌,0.26,,0.21,,
 肝病,0.21,,0.12,,
-肠易激综合征,0.18,0.13,0.17,0.17,
-肺部感染或疾病,0.12,,0.17,0.38,
+肠易激综合征,0.18,0.13,0.17,0.17,0.16
+肺部感染或疾病,0.12,,0.17,0.38,0.09
 肺部疾病,,0.13,,,
 肾病,0.05,,0.05,,
 胃病,0.20,,0.21,,
 胆病,0.14,,0.15,,
-脂肪,71,59,89,62,
-自体免疫病,,0.29,,0.29,
-自闭症,,0.10,,0.45,
-苏氨酸,10,14,12,92,
-蛋氨酸,8,50,10,95,
-蛋白质,44,93,83,52,
-赖氨酸,7,94,38,94,
+自体免疫病,,0.29,,0.29,0.11
+自闭症,,0.10,,0.45,0.09

docs/参考资料/CSV/维生素评估.csv

@@ -1,10 +1,10 @@
 维生素,501999942-某人,530010234-侯,547982403,儿童示例,朱评估报告
-叶酸,35,90,62,13,
-维生素A,84,74,81,26,
-维生素B1,2,38,56,77,
-维生素B12,25,14,31,77,
-维生素B2,77,32,33,77,
-维生素B5,64,26,48,78,
-维生素B6,38,62,58,79,
-维生素C,31,22,36,60,
-维生素D,93,16,92,16,
+叶酸,35,90,62,13,47
+维生素A,84,74,81,26,54
+维生素B1,2,38,56,77,253
+维生素B12,25,14,31,77,53
+维生素B2,77,32,33,77,53
+维生素B5,64,26,48,78,69
+维生素B6,38,62,58,79,75
+维生素C,31,22,36,60,88
+维生素D,93,16,92,16,90

docs/参考资料/extract_full_report_v5.py

@@ -398,7 +398,18 @@ def extract_barrier_and_scfa_triplet(all_lines):
             continue
 
         i += 1
-
+    
+    # 去重（按名称去重，每个 section 内每个指标名只保留一条）
+    for section in ['barrier', 'scfa', 'neurotransmitter']:
+        seen = set()
+        deduped = []
+        for item in results[section]:
+            n = item.get('名称', '')
+            if n and n not in seen:
+                seen.add(n)
+                deduped.append(item)
+        results[section] = deduped
+    
     return results
 
 
@@ -860,6 +871,10 @@ def main_csv():
             rows = parsed.get(mod_name, [])
             if not rows and mod_name == '氨基酸评估':
                 rows = parsed.get('氨基酸评估_p2', []) + parsed.get('氨基酸评估_p3', [])
+            # 如果有已知名称词表，过滤三元组路径
+            if whitelist and rows:
+                whitelist_set = set(whitelist)
+                rows = [r for r in rows if r['名称'] in whitelist_set]
             for r in rows:
                 data.setdefault(r['名称'], {})[label] = r['数值']